There’s something absolutely magical about mini muffins that regular-sized ones just can’t replicate. Perhaps it’s the way they fit perfectly in your hand, or how you can enjoy two (or three!) without any guilt. These mini chocolate chip muffins have become my go-to recipe whenever I need a quick treat that feels special but doesn’t require hours in the kitchen. They remind me of those expensive bakery-style mini muffins, but honestly, these homemade versions taste even better—and you’ll know exactly what’s going into them.
Why You’ll Love This Recipe
These bite-sized beauties are pure perfection in every way. First and foremost, they come together in just 22 minutes from start to finish, making them ideal for busy mornings or last-minute baking needs. Additionally, the Greek yogurt keeps them incredibly moist while adding a subtle tang that balances the sweetness perfectly.
What’s more, the recipe uses maple syrup instead of refined sugar, giving these muffins a natural sweetness with deeper flavor notes. The mini chocolate chips throughout ensure every single bite contains that melty chocolate goodness we all crave. Best of all, this recipe yields 24 mini muffins, so there’s plenty to share—or freeze for later!
Ingredients You’ll Need
Main Components
- 1 cup plain full-fat Greek yogurt – provides moisture and a tender crumb
- ¼ cup unsalted butter, melted and slightly cooled – adds richness
- 2 eggs – binds everything together
- 2 teaspoons vanilla extract – enhances the overall flavor
- ½ cup maple syrup – natural sweetness
- 1 ½ cups all-purpose flour – the base structure
- 1 teaspoon baking powder – helps them rise
- ½ teaspoon baking soda – creates a tender texture
- ¼ teaspoon salt – balances the sweetness
- 1 cup mini chocolate chips – the star ingredient, plus extra for topping
Kitchen Essentials
You’ll need a mini muffin pan, two mixing bowls, a whisk, a rubber spatula, and nonstick cooking spray for this recipe.
Step-by-Step Instructions
Preparing Your Ingredients
Start by preheating your oven to 350°F, ensuring it reaches the proper temperature before your batter is ready. Meanwhile, melt the butter and set it aside to cool slightly—you don’t want it hot enough to cook the eggs when combined.
Mixing the Dry Ingredients
In your first mixing bowl, whisk together the flour, salt, baking soda, and baking powder. This step ensures that your leavening agents are evenly distributed throughout the flour, which means every muffin will rise beautifully and uniformly.
Combining the Wet Ingredients
Grab your second mixing bowl and whisk together the Greek yogurt, maple syrup, vanilla extract, and melted butter until smooth. Then, whisk in the eggs one at a time, making sure each is fully incorporated before adding the next. This creates a creamy, homogeneous mixture that will blend seamlessly with the dry ingredients.
Bringing It All Together
Add the dry ingredients to the wet mixture, then use a rubber spatula to gently stir until just combined. Here’s where technique matters—stop mixing as soon as you no longer see dry flour streaks. Overmixing develops the gluten in the flour, which results in tough, dense muffins rather than tender ones.
Next, fold in the mini chocolate chips with gentle strokes, distributing them evenly throughout the batter.
Baking Your Muffins
Spray your mini muffin pan generously with nonstick spray, making sure to coat both the cups and the top surface. Using a small cookie scoop or spoon, distribute the batter evenly among the cups, filling each about three-quarters full. If you’d like, press a few extra mini chocolate chips on top of each muffin for that bakery-style appearance.
Bake for 12-14 minutes, or until a toothpick inserted into the center comes out clean or with just a few moist crumbs. Since these are mini muffins, they bake quickly, so start checking at the 12-minute mark to avoid overbaking.
Cooling Process
Once baked, let the muffins cool in the pan for 2-3 minutes. This brief resting period allows them to set up slightly, making them easier to remove without breaking. Afterward, transfer them to a wire cooling rack to cool completely, which prevents the bottoms from becoming soggy.

Serving Suggestions
These mini muffins are incredibly versatile when it comes to serving. For breakfast, pair them with fresh fruit and a smoothie for a balanced morning meal. They also make perfect additions to brunch spreads, arranged on a tiered stand alongside other pastries.
As an after-school snack, serve them with cold milk or hot chocolate for a comforting treat. Furthermore, they’re excellent for lunchboxes—their small size makes them easy to pack and fun for kids to eat. For parties or gatherings, display them on a decorative platter with a dusting of powdered sugar for an elegant presentation.
Recipe Variations
Flavor Twists
Transform these muffins by swapping the mini chocolate chips for other mix-ins. Try blueberries for a fruity version, or use chopped nuts like walnuts or pecans for added crunch and nutrition. White chocolate chips with dried cranberries create a sophisticated flavor combination.
Dietary Modifications
For a whole grain version, substitute half of the all-purpose flour with whole wheat flour or white whole wheat flour. You can also make them gluten-free by using a 1-to-1 gluten-free flour blend—just make sure it contains xanthan gum.
If you need a dairy-free option, replace the Greek yogurt with coconut yogurt and use coconut oil instead of butter. The flavor will be slightly different but equally delicious.
Add-Ins and Toppings
Enhance your muffins by adding ½ teaspoon of cinnamon to the dry ingredients for warmth, or incorporate orange zest for brightness. A streusel topping made from oats, brown sugar, and butter adds delightful texture contrast.
Make-Ahead Tips
These mini muffins are perfect for meal prep and planning ahead. Once completely cooled, store them in an airtight container at room temperature for up to 3 days. They’ll stay moist and delicious throughout this period.
For longer storage, freeze them for up to 3 months. Place cooled muffins in a single layer on a baking sheet and freeze until solid, then transfer to a freezer-safe bag or container. This prevents them from sticking together, allowing you to grab just the amount you need.
To thaw, simply leave them at room temperature for about 30 minutes, or microwave individual muffins for 15-20 seconds for a warm, fresh-from-the-oven taste. You can also refresh day-old muffins by warming them in a 300°F oven for 5 minutes.
Notes
Yogurt matters: Using full-fat Greek yogurt is crucial for the texture and moisture of these muffins. Low-fat or non-fat versions will result in drier, less tender muffins.
Butter temperature: Make sure your melted butter has cooled slightly before adding it to the wet ingredients. If it’s too hot, it can cook the eggs and create an unpleasant texture.
Don’t overmix: This is the golden rule of muffin-making. Stir only until the dry ingredients are just moistened—lumps are perfectly fine. Overmixed batter produces tough, rubbery muffins.
Mini chocolate chips work best: Regular-sized chocolate chips are too large for mini muffins and can cause uneven baking. The mini chips distribute more evenly and ensure chocolate in every bite.
Oven temperature: Every oven is slightly different, so keep a close eye on your muffins starting at the 12-minute mark. They’re done when the tops spring back lightly when touched and a toothpick comes out clean.

Frequently Asked Questions
Can I make these as regular-sized muffins instead?
Absolutely! This same batter works beautifully for standard muffins. You’ll get about 12 regular-sized muffins, and they’ll need to bake for 18-22 minutes at the same temperature. Just keep an eye on them and test with a toothpick.
Why did my muffins turn out dense?
Dense muffins usually result from overmixing the batter or using ingredients that are too cold. Make sure your eggs and yogurt are at room temperature, and remember to stir the batter only until just combined. Additionally, check that your baking powder and baking soda are fresh—expired leavening agents won’t create the proper rise.
Can I reduce the sugar in this recipe?
While you can reduce the maple syrup slightly, keep in mind that it provides both sweetness and moisture. If you cut it down to ⅓ cup, the muffins will be less sweet but still delicious—especially if you’re using plenty of chocolate chips.
How can I prevent the muffins from sticking?
Generous application of nonstick spray is key. Make sure to spray not just the cups but also the flat surface of the pan, as the batter may spread slightly. Alternatively, you can use mini muffin liners for easy removal, though the muffins won’t develop those lovely crispy edges.
What’s the best way to measure flour for this recipe?
For the most accurate measurement, spoon the flour into your measuring cup and level it off with a knife. Don’t scoop directly from the bag or pack it down, as this can result in too much flour and dry, crumbly muffins. If you have a kitchen scale, 1 ½ cups of flour equals approximately 180-190 grams.
Can I use honey instead of maple syrup?
Yes, you can substitute honey in equal amounts. The flavor will be slightly different—sweeter and more floral—but the texture will remain the same. Keep in mind that honey is a bit thicker than maple syrup, so make sure to whisk it thoroughly into the wet ingredients.
Nutrition Information (per muffin): Calories: 113kcal | Carbohydrates: 16g | Protein: 3g | Fat: 4g | Saturated Fat: 2g | Cholesterol: 20mg | Sodium: 79mg | Fiber: 0.4g | Sugar: 9g
Prep Time: 10 minutes | Cook Time: 12 minutes | Total Time: 22 minutes | Servings: 24 mini muffins